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Service Information and Rates

Genomic Services
  
Protein Services

Oligo Synthesis (Shipping and Handling)

Peptide Synthesis (Shipping and Handling)

Gene Expression

Mass Spectrometry

Real-Time PCR

Surface Plasmon Resonance (Biacore)

Pyrosequencing

Next Generation Sequencing

 

DNA (Sanger) Sequencing & Fragment Analysis (GeneScan)

Single Cell Genomics

RNA/DNA QC
   • Agilent Bioanalyzer QC
   • AATI Fragment Analyzer QC

** We only accept PTAs or Purchase Orders as a form of payment. We are currently not set up for any credit card transactions **

 

* Base rates are listed for each service. Stanford Facilities and Administrative (F&A) costs will be added on the invoice accordingly.
Stanford F&A Cost Rates
SU Affiliate
8%
Non-Profit and Commercial
54.4%
GENOMIC SERVICES
Oligo Synthesis (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 54.4% (F&A)
*Commercial

plus 54.4% (F&A)
• DNA (per base):
• 40nmole (standard scale)
• 200nmole
• 1µmole
• DNA bulk orders (per base):
• 40nmole (8-15 oligos/order)
• 40nmole (16-23 oligos/order)
• 40nmole or 25nmole (≥24 oligos/order)
• 25nmole - 96-well plate format by request (≥48 oligos/order)
• RNA (per base):
• 40nmole
• 200nmole
• 1umole
• Purification (per oligo):
• 40nmole and 200nmole synthesis scales
• 1umole scale
• Modification:
• Biotin -- (**For any orders with 3 or more modifications/order, please inquire.)
• TagMan Probe reporters and quenchers
• Inosine
• dU
• 5' Phosphorylation
• 5' Thiolation
• Internal mixed bases
• Phosphothiolation (antisense)
• Other modifications
• Gene Synthesis
**Shipping and Handling :
• USA
• International
0.42
1.10
2.27

0.35
0.30
0.14
0.14

7.90
10.20
17.80
12
26.25

56
Inquire
11.50
11.50

11.50
Inquire
Inquire
no charge
Inquire
Inquire
NA
71
0.42
1.10
2.27

0.35
0.30
0.14
0.14

7.90
10.20
17.80
12
26.25

56
Inquire
11.50
11.50

11.50
Inquire
Inquire
no charge
Inquire
Inquire
NA
71
0.42
1.10
2.27

0.35
0.30
0.14
0.14

7.90
10.20
17.80
12
26.25

56
Inquire
11.50
11.50
11.50
Inquire
Inquire
no charge
Inquire
Inquire
41
71
0.53
1.32
2.73

0.42
0.36
0.17
0.17

9.80
12.25
21.50
15.20
32.50

68
Inquire
14.80
14.80
14.80
Inquire
Inquire
no charge
Inquire
Inquire
41
71
Gene Expression (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 54.4% (F&A)
*Commercial

plus 54.4% (F&A)
Expression Analysis: Full Services (** Chip is not included **)  
• 3' Array:
-- cDNA synthesis to data acquisition; includes Bioanalyzer QC.
• Standard (>50ng): using Affymetrix 3' IVT Plus protocol.
• Small (500pg - 50ng): using Affymetrix 3' IVT Pico protocol
• Gene Array:
-- Whole Transcript (WT) Sense Target Labeling to data acquisition.
• Standard (>50ng): using Affymetrix WT Plus protocol.
• Small (500pg - 2ng): using Affymetrix WT Pico protocol.
• Human Transcriptome Array 2.0 (HTA 2.0)/Mouse Transcriptome Array 1.0 (MTA 1.0)/Rat Transcriptome Array 1.0 (RTA 1.0)
-- Interrogates exons for coding transcripts, exon-exon splice junctions and non-coding transcripts.
• miRNA Array:
-- miRNA coverage of 71 organisms, including human, mouse, rat, canine, and rhesus macaque.


470
495
455
460

525

210


470
495
455
460

525

210


470
495
455
460

525

210


570
595
555
560
635
260
Other Services  
• Hybridization and Scanning (** Chip is not included **)
109
109
109
134
Real-Time PCR (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 54.4% (F&A)
*Commercial

plus 54.4% (F&A)
• Instrument run: (per plate)
-- Client prepares plate ready to run
• Full Service: (per sample)
• Set-up fee (per order) -- Prices do not include primers
• Reverse Transcription -- (Bioanalyzer QC included)
• qPCR (triplicate) -- using either Taqman or SybrGreen Chemistry
• Custom Assay -- Taqman qPCR optimization
• Custom Assay -- SybrGreen qPCR optimization
47
Inquire
54
25
Inquire
Inquire
47
Inquire
54
25
Inquire
Inquire
47
Inquire
54
25
Inquire
Inquire
58
Inquire
65
27
Inquire
Inquire
Pyrosequencing/PyroMark (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 54.4% (F&A)
*Commercial

plus 54.4% (F&A)
• New Project Consultation
• PCR and Pyrosequencing Run/Sample (one target region):
• first 6 samples (per sample charge per order)
• additional sample (per sample charge per order)
• Run Only:
-- PAN captures biotinylated product and runs client generated PCR products.
• first 6 samples (per sample charge per order)
• additional sample (per sample charge per order)

• Self Service: Instrument Run Only
-- Client prepares and runs plate; Reagents and consumables are not included but can be purchased from PAN.

Inquire
42
15


31
13
38
Inquire
42
15


31
13
38
Inquire
42
15


31
13
38
Inquire
55
19


36
15
47
Next Generation Sequencing (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 54.4% (F&A)
*Commercial

plus 54.4% (F&A)
• Library Prep Services: (Price per Preparation including QC)
• Low Input RNA Library Preparation:
• Clontech SMARTer Stranded Total RNA-Seq
• Clontech SMART-Seq v4 Ultra Low or Pico RNA-Seq
• RNA Library Preparation:
• Illumina TruSeq Stranded Total RNA
• Illumina TruSeq Stranded mRNA
• DNA Library Preparation:
• DNAflex
• Nextera XT DNA
• Targeted Sequence: (Does not include kit)
• 16S Microbiome Amplicon-Seq
• MiSeq Services:
• MiSeq Run Only:
-- Client provides MiSeq reagent kit with samples preloaded into the cartridge.
• 2 x 75 cycles
• 2 x 150 cycles
• 2 x 250 cycles
• 2 x 300 cycles
• Micro 300 cycles
• Nano 300 cycles
• Nano 500 cycles
• MiSeq Full Service: Set-up and Run
-- PAN provides MiSeq reagent kit and initial sample QC on Agilent 2100 Bioanalyzer.
• 2 x 75 cycles
• 2 x 150 cycles
• 2 x 250 cycles
• 2 x 300 cycles
• Micro 300 cycles
• Nano 300 cycles
• Nano 500 cycles

298
298

255
234

199
242
82
170


336
420
590
721
420
336
341


1363
1534
1874
2100
739
567
680

298
298

255
234

199
242
82
170


336
420
590
721
420
336
341


1363
1534
1874
2100
739
567
680

298
298

255
234

199
242
82
170


336
420
590
721
420
336
341


1363
1534
1874
2100
739
567
680

367
367

307
286

240
262
100
203


425
533
749
903
533
425
437


1533
1703
2100
2326
885
680
818
DNA Sequencing & Fragment Analysis (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 54.4% (F&A)
*Commercial

plus 54.4% (F&A)
• DNA (Sanger) Sequencing:
• Per Sample Price:
• Full Service
• Intermediate Service (Clean-up & Run)
• Economy Service (Run Only)
• Per Plate Price:
• Full Service
• Run Only
• Fragment Analysis (GeneScan):
• Per Sample Price:
• Clean-up and Run
• Run only
• Per Plate Price:
• Clean-up and Run
• Run only


8.25
5.90
4.90

580
208


10.50
7.50

910
640



8.25
5.90
4.90

580
208


10.50
7.50

910
640



825
5.90
4.90

580
208


10.50
7.5

910
640


9.80
7.20
5.92

620
258


12
8.50

1025
730
Single Cell Genomics (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 54.4% (F&A)
*Commercial

plus 54.4% (F&A)
• Fluidigm C1:
• Instrument Run Only:
-- Client provides Chip, C1 Single Cell Auto Prep Reagents, SMARTer Ultra Low RNA reagents and sample QC
• Full Service: Single Cell Capture and cDNA Amplification (** Chip is not included **)
-- PAN provides Single Cell Auto Prep Reagents, SMARTer Ultra Low RNA reagents and sample QC
• 96 Cell Chip
• 800 Cell Chip
• NexteraXT cDNA Library Prep (per sample)
• Library Prep Services: (Price per Preparation including QC)
• Ultralow Input RNA-Seq: (Clontech SMART-Seq kit)
• Illumina/Biorad ddSEQ Single-Cell RNA-Seq kit
• scATAC-Seq
• BD Rhapsody Single-cell Assays
• Spatial Transcriptomics
Inquire

Inquire
Inquire
49

Inquire
Inquire
Inquire
Inquire
Inquire
Inquire

Inquire
Inquire
49

Inquire
Inquire
Inquire
Inquire
Inquire
Inquire

Inquire
Inquire
49

Inquire
Inquire
Inquire
Inquire
Inquire
Inquire

Inquire
Inquire
60

Inquire
Inquire
Inquire
Inquire
Inquire
RNA-DNA QC (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 54.4% (F&A)
*Commercial

plus 54.4% (F&A)
• Agilent Bioanalyzer QC (per sample)
• RNA:
• Nano RNA (up to 12 samples)
         ° each additional sample
• Pico RNA (up to 11 samples)
         ° each additional sample
• Small RNA (up to 121 samples)
         ° each additional sample
• DNA:
• HS DNA (up to 11 samples)
         ° each additional sample
• DNA 1000 (up to 12 samples)
         ° each additional sample
• AATI Fragment Analyzer QC (per 96-well - plate format only)
• Full Service:
-- PAN provides reagents and runs samples
• HS NGS DNA, HS Large Fragment DNA or RNA
• Small RNA
• Run Only :
-- Client provides reagents and PAN runs samples
• Investigator Use:
-- Client provides reagents and runs samples; Training & Expertise required


22
19
25
21
30
24

30
24
24
21



535
757

140
115


22
19
25
21
30
24

30
24
24
21



535
757

140
115


22
19
25
21
30
24

30
24
24
21



535
757

140
115


27
22
30
25
36
27

36
27
29
25



605
838

162
125
PROTEIN SERVICES
Peptide Synthesis (top)
(Non-purified peptide synthesis includes analytical HPLC and Mass spec QC)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 54.4% (F&A)
*Commercial

plus 54.4% (F&A)
• 0.1 mmol Scale: (~100mg) - non purified
• Set-up fee (includes first 5 Amino Acids)
• Per additional Amino Acid (>5 AA)
• 0.2 mmol Scale: (200mg - 500mg) - non purified
• Set-up fee (includes first 5 Amino Acids)
• Per additional Amino Acid (>5 AA)
• Special Modification Coupling Fee
• HPLC Purification
• Modification
**Shipping and Handling :
• USA
• International
237
51
351
73
73
367
Inquire
NA
71
237
51
351
73
73
367
Inquire
NA
71

237
51

351
73
73
367
Inquire
41
71

298
63

448
92
92
470
Inquire
41
71
Mass Spectrometry (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 54.4% (F&A)
*Commercial

plus 54.4% (F&A)
• Mass spectrometry by MALDI: (per sample)
• Peptides (500-5000Da)
• Other (including proteins, DNA, polymer, small molecules)
• Prespotted plate
• Zip Tip Cleanup

27
47
20
23

27
47
20
23

27
47
20
23

41
72
27
33
Surface Plasmon Resonance -- Biacore (top)
(Experimental set-up includes generation of biosensor surfaces for ligand capturing: Direct or indirect capture)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 54.4% (F&A)
*Commercial

plus 54.4% (F&A)
• Set-up fee (per chip, user provides chip)
• Experiment:
• Full-day duration
• Half-day duration
• User-operated instrument session (per hour)
• Biacore 3000
• T200
• User-operated instrument session (per day)
• Biacore 3000
• T200
• Consulting or data analysis (half-day duration)
405
700
350

Inquire
130

Inquire
660
370
405
700
350

Inquire
130

Inquire
660
370
405

700
350

Inquire
130

Inquire
660
370
599

1055
528

Inquire
195

Inquire
970
550

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