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Service Information and Rates

Genomic Services
  
Protein Services

Oligo Synthesis (Shipping and Handling)

Peptide Synthesis (Shipping and Handling)

Gene Expression

Mass Spectrometry

Real-Time PCR

Surface Plasmon Resonance (Biacore)

Pyrosequencing

Next Generation Sequencing

 

DNA (Sanger) Sequencing & Fragment Analysis (GeneScan)

Single Cell Genomics

RNA/DNA QC
   • Agilent Bioanalyzer QC
   • AATI Fragment Analyzer QC

** We only accept PTAs or Purchase Orders as a form of payment. We are currently not set up for any credit card transactions **

 

* Base rates are listed for each service. Stanford Facilities and Administrative (F&A) costs will be added on the invoice accordingly.
Stanford F&A Cost Rates
SU Affiliate
8%
Non-Profit and Commercial
55.3%
GENOMIC SERVICES
Oligo Synthesis (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 55.3% (F&A)
*Commercial

plus 55.3% (F&A)
• DNA (per base):
• 40nmole (standard scale)
• 200nmole
• 1µmole
• DNA bulk orders (per base):
• 40nmole (8-15 oligos/order)
• 40nmole (16-23 oligos/order)
• 40nmole or 25nmole (≥24 oligos/order)
• 25nmole - 96-well plate format by request (≥48 oligos/order)
• RNA (per base):
• 40nmole
• 200nmole
• 1umole
• Purification (per oligo):
• 40nmole and 200nmole synthesis scales
• 1umole scale
• Modification:
• Biotin -- (**For any orders with 3 or more modifications/order, please inquire.)
• TagMan Probe reporters and quenchers
• Inosine
• dU
• 5' Phosphorylation
• 5' Thiolation
• Internal mixed bases
• Phosphothiolation (antisense)
• Other modifications
• Gene Synthesis
**Shipping and Handling :
• USA
• International
0.40
1.00
2.16

0.33
0.28
0.13
0.13

7.60
9.75
17
11.50
25

53
Inquire
11
11

11
Inquire
Inquire
no charge
Inquire
Inquire
NA
67
0.40
1.00
2.16

0.33
0.28
0.13
0.13

7.60
9.75
17
11.50
25

53
Inquire
11
11

11
Inquire
Inquire
no charge
Inquire
Inquire
NA
67
0.40
1.00
2.16

0.33
0.28
0.13
0.13

7.60
9.75
17
11.50
25

53
Inquire
11
11
11
Inquire
Inquire
no charge
Inquire
Inquire
39
67
0.50
1.20
2.60

0.40
0.34
0.16
0.16

9.30
11.75
20.50
14.50
31

65
Inquire
14
14
14
Inquire
Inquire
no charge
Inquire
Inquire
39
67
Gene Expression (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 55.3% (F&A)
*Commercial

plus 55.3% (F&A)
Expression Analysis: Full Services (** Chip is not included **)  
• 3' Array:
-- cDNA synthesis to data acquisition; includes Bioanalyzer QC.
• Standard (>50ng): using Affymetrix 3' IVT Plus protocol.
• Small (500pg - 50ng): using Affymetrix 3' IVT Pico protocol
• Gene Array:
-- Whole Transcript (WT) Sense Target Labeling to data acquisition.
• Standard (>50ng): using Affymetrix WT Plus protocol.
• Small (500pg - 2ng): using Affymetrix WT Pico protocol.
• Human Transcriptome Array 2.0 (HTA 2.0)/Mouse Transcriptome Array 1.0 (MTA 1.0)/Rat Transcriptome Array 1.0 (RTA 1.0)
-- Interrogates exons for coding transcripts, exon-exon splice junctions and non-coding transcripts.
• miRNA Array:
-- miRNA coverage of 71 organisms, including human, mouse, rat, canine, and rhesus macaque.


470
495
455
460

525

210


470
495
455
460

525

210


470
495
455
460

525

210


570
595
555
560
635
260
Other Services  
• Hybridization and Scanning (** Chip is not included **)
103
103
103
127
Real-Time PCR (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 55.3% (F&A)
*Commercial

plus 55.3% (F&A)
• Instrument run: (per plate)
-- Client prepares plate ready to run
• Full Service: (per sample)
• Set-up fee (per order) -- Prices do not include primers
• Reverse Transcription -- (Bioanalyzer QC included)
• qPCR (triplicate) -- using either Taqman or SybrGreen Chemistry
• Custom Assay -- Taqman qPCR optimization
• Custom Assay -- SybrGreen qPCR optimization
44
Inquire
50
23
Inquire
Inquire
44
Inquire
50
23
Inquire
Inquire
44
Inquire
50
23
Inquire
Inquire
54
Inquire
60
25
Inquire
Inquire
Pyrosequencing/PyroMark (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 55.3% (F&A)
*Commercial

plus 55.3% (F&A)
• New Project Consultation
• PCR and Pyrosequencing Run/Sample (one target region):
• first 6 samples (per sample charge per order)
• additional sample (per sample charge per order)
• Run Only:
-- PAN captures biotinylated product and runs client generated PCR products.
• first 6 samples (per sample charge per order)
• additional sample (per sample charge per order)

• Self Service: Instrument Run Only
-- Client prepares and runs plate; Reagents and consumables are not included but can be purchased from PAN.

Inquire
38
14


28
12
35
Inquire
38
14


28
12
35
Inquire
38
14


28
12
35
Inquire
50
18


32
14
43
Next Generation Sequencing (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 55.3% (F&A)
*Commercial

plus 55.3% (F&A)
• Library Prep Services: (Price per Preparation including QC)
• Low Input RNA Library Preparation:
• Clontech SMARTer Stranded Total RNA-Seq
• Clontech SMART-Seq v4 Ultra Low or Pico RNA-Seq
• RNA Library Preparation:
• Illumina TruSeq Stranded Total RNA
• Illumina TruSeq Stranded mRNA
• DNA Library Preparation:
• DNAflex
• Nextera XT DNA
• Targeted Sequence: (Does not include kit)
• 16S Microbiome Amplicon-Seq
• MiSeq Services:
• MiSeq Run Only:
-- Client provides MiSeq reagent kit with samples preloaded into the cartridge.
• 2 x 75 cycles
• 2 x 150 cycles
• 2 x 250 cycles
• 2 x 300 cycles
• Micro 300 cycles
• Nano 300 cycles
• Nano 500 cycles
• MiSeq Full Service: Set-up and Run
-- PAN provides MiSeq reagent kit and initial sample QC on Agilent 2100 Bioanalyzer.
• 2 x 75 cycles
• 2 x 150 cycles
• 2 x 250 cycles
• 2 x 300 cycles
• Micro 300 cycles
• Nano 300 cycles
• Nano 500 cycles

294
294

253
232

196
232
79
155


320
400
562
687
400
320
325


1298
1461
1785
2000
704
540
649

294
294

253
232

196
232
79
155


320
400
562
687
400
320
325


1298
1461
1785
2000
704
540
649

294
294

253
232

196
232
79
155


320
400
562
687
400
320
325


1298
1461
1785
2000
704
540
649

360
360

304
283

235
252
95
185


405
508
714
860
508
405
416


1460
1622
2000
2216
843
649
779
DNA Sequencing & Fragment Analysis (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 55.3% (F&A)
*Commercial

plus 55.3% (F&A)
• DNA (Sanger) Sequencing:
• Per Sample Price:
• Full Service
• Intermediate Service (Clean-up & Run)
• Economy Service (Run Only)
• Per Plate Price:
• Full Service
• Run Only
• Fragment Analysis (GeneScan):
• Per Sample Price:
• Clean-up and Run
• Run only
• Per Plate Price:
• Clean-up and Run
• Run only


8.00
5.75
4.75

580
208


9.80
7.10

890
620



8.00
5.75
4.75

580
208


9.80
7.10

890
620



8.00
5.75
4.75

580
208


9.80
7.10

890
620


9.50
7.00
5.75

620
258


11.30
8.00

995
700
Single Cell Genomics (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 55.3% (F&A)
*Commercial

plus 55.3% (F&A)
• Fluidigm C1:
• Instrument Run Only:
-- Client provides Chip, C1 Single Cell Auto Prep Reagents, SMARTer Ultra Low RNA reagents and sample QC
• Full Service: Single Cell Capture and cDNA Amplification (** Chip is not included **)
-- PAN provides Single Cell Auto Prep Reagents, SMARTer Ultra Low RNA reagents and sample QC
• 96 Cell Chip
• 800 Cell Chip
• NexteraXT cDNA Library Prep (per sample)
• Library Prep Services: (Price per Preparation including QC)
• Ultralow Input RNA-Seq: (Clontech SMART-Seq kit)
• Illumina/Biorad ddSEQ Single-Cell RNA-Seq kit
• scATAC-Seq
• BD Rhapsody Single-cell Assays
• Spatial Transcriptomics
200

975
Inquire
47

Inquire
Inquire
Inquire
Inquire
Inquire
200

975
Inquire
47

Inquire
Inquire
Inquire
Inquire
Inquire
200

975
Inquire
47

Inquire
Inquire
Inquire
Inquire
Inquire
250

1200
Inquire
57

Inquire
Inquire
Inquire
Inquire
Inquire
RNA-DNA QC (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 55.3% (F&A)
*Commercial

plus 55.3% (F&A)
• Agilent Bioanalyzer QC (per sample)
• RNA:
• Nano RNA (up to 12 samples)
         ° each additional sample
• Pico RNA (up to 11 samples)
         ° each additional sample
• Small RNA (up to 121 samples)
         ° each additional sample
• DNA:
• HS DNA (up to 11 samples)
         ° each additional sample
• DNA 1000 (up to 12 samples)
         ° each additional sample
• AATI Fragment Analyzer QC (per 96-well - plate format only)
• Full Service:
-- PAN provides reagents and runs samples
• HS NGS DNA, HS Large Fragment DNA or RNA
• Small RNA
• Run Only :
-- Client provides reagents and PAN runs samples
• Investigator Use:
-- Client provides reagents and runs samples; Training & Expertise required


20
17
23
19
27
22

27
22
22
19



490
705

130
105


20
17
23
19
27
22

27
22
22
19



490
705

130
105


20
17
23
19
27
22

27
22
22
19



490
705

130
105


24
20
27
23
33
26

33
26
27
23



555
780

150
115
PROTEIN SERVICES
Peptide Synthesis (top)
(Non-purified peptide synthesis includes analytical HPLC and Mass spec QC)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 55.3% (F&A)
*Commercial

plus 55.3% (F&A)
• 0.1 mmol Scale: (~100mg) - non purified
• Set-up fee (includes first 5 Amino Acids)
• Per additional Amino Acid (>5 AA)
• 0.2 mmol Scale: (200mg - 500mg) - non purified
• Set-up fee (includes first 5 Amino Acids)
• Per additional Amino Acid (>5 AA)
• Special Modification Coupling Fee
• HPLC Purification
• Modification
**Shipping and Handling :
• USA
• International
220
47
325
68
68
340
Inquire
NA
67
220
47
325
68
68
340
Inquire
NA
67

220
47

325
68
68
340
Inquire
39
67

276
58

415
85
85
428
Inquire
39
67
Mass Spectrometry (top)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 55.3% (F&A)
*Commercial

plus 55.3% (F&A)
• Mass spectrometry by MALDI: (per sample)
• Peptides (500-5000Da)
• Other (including proteins, DNA, polymer, small molecules)
• Prespotted plate
• Zip Tip Cleanup

25
44
18
21

25
44
18
21

25
44
18
21

38
67
25
30
Surface Plasmon Resonance -- Biacore (top)
(Experimental set-up includes generation of biosensor surfaces for ligand capturing: Direct or indirect capture)
On Campus
*SU Affiliate

plus 8% (F&A)
*Non-Profit

plus 55.3% (F&A)
*Commercial

plus 55.3% (F&A)
• Set-up fee (per chip, user provides chip)
• Experiment:
• Full-day duration
• Half-day duration
• User-operated instrument session (per hour)
• Biacore 3000
• T200
• User-operated instrument session (per day)
• Biacore 3000
• T200
• Consulting or data analysis (half-day duration)
375
650
325

Inquire
120

Inquire
610
335
375
650
325

Inquire
120

Inquire
610
335
375

650
325

Inquire
120

Inquire
610
335
555

980
490

Inquire
180

Inquire
900
500

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