PAN_DNASEQ

PAN: Protein and Nucleic Acid Facility

» DNA Sequencing
& Fragment Analysis

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Genomic Services

• Next Gen Sequencing

• DNA Sequencing
& Fragment Analysis

• Single Cell Genomics

Protein Services

Located in rooms
B065 and B017

• SOFTWARE

Data will be sent from dnaseq@stanford.edu to the email address associated with the order. For orders submitted before September 15, 2019, please contact us to retrieve your data. Please include the customer name and order number or order date when requesting archived results.

DNA SEQUENCING SOFTWARE	FRAGMENT ANALYSIS SOFTWARE

DNA Sequencing results are provided in two different formats:
1) .seq - text file - can be opened with any text/word software (ie notepad, textpad, word, etc).
2) .ab1 - chromatogram file - can be opened with one of the following...

DNA SEQUENCING	FOR PC: (free or demo versions)
SeqTrace	https://code.google.com/p/seqtrace/
Sequence Scanner:	https://www.thermofisher.com/us/en/home/life-science/sequencing/sanger-sequencing/sanger-dna-sequencing/sanger-sequencing-data-analysis.html
FinchTV:	https://digitalworldbiology.com/FinchTV
Chromas:	http://www.technelysium.com.au/chromas_lite.html
DNA Star:	*Can be requested/downloaded from CSBF website
Sequencher:	http://www.genecodes.com/
	FOR MAC:(free or demo versions)
SeqTrace	https://code.google.com/p/seqtrace/
Macvector:	https://macvector.com/
FinchTV:	https://digitalworldbiology.com/FinchTV
	FOR BOTH PC and MAC (10 free reads a day)
♦New♦ Enhanced basecaller (can give you longer reads!)	https://www.nucleics.com/peaktrace/

Fragment Analysis/GeneScan results come in one format - .fsa

FRAGMENT ANALYSIS	FOR PC: (free or demo versions)
PeakScanner :	https://www.thermofisher.com/us/en/home/life-science/sequencing/fragment-analysis/fragment-analysis-fundamentals/fragment-analysis-software-data-analysis.html?SID=fr-cesoftware-main
GeneMarker::	http://www.softgenetics.com/GeneMarker.html
STRand:	http://www.vgl.ucdavis.edu/informatics/strand.php
FSA2PC:	http://www.cebitec.uni-bielefeld.de/brf/trace2ps/trace2ps.html
OSIRIS:	https://www.ncbi.nlm.nih.gov/osiris/new/#version2-13notes (Both PC and MAC)